Vrije Universiteit Brussel

 

Research Topics

The Analytical Chemistry research group within the department Analytical Chemistry and Pharmaceutical Technology (FABI) is performing research in Applied Chemometrics and in Separation Science-related topics. Earlier, two groups could be distinguished within FABI, the Chemometrics and Metrology group headed by profs. D.L. Massart and J. Smeyers-Verbeke, and the Separation Group by Y. Vander Heyden. Unfortunately, Prof. Massart passed away in 2005. At the moment the distinction between both groups is less pronounced since Y. Vander Heyden heads, both together with prof. J. Smeyers-Verbeke and prof.D. Mangelings. However, it is our goal to continue research in both domains.
The goals of the Separation group are to apply chemometrics in separation science on the one hand, and to evaluate new developments in separation science on the other. At the moment we focus on certain areas of separation science, such as chiral separations, fingerprint development and the application of chemometrics in chromatographic processes and data analysis.

In the following an overview is given of the ongoing or recently performed research topics within FABI

Topics

Some more information on the different topics

Chiral separations and the development of a knowledge based system (D. Mangelings, H. Ates, A. Younes, A. Hendrickx, K. De Klerck)

The interest in the development of technologies to resolve isomeric drugs is continually increasing due to, among others, more and more stringent regulatory requirements. Chromatographic and electrophoretic techniques are the most popular in this field. Chiral discrimination mechanisms are complex and therefore the enantioselectivity of a chiral selector towards a molecule is up till now hardly predictable. Furthermore, over one hundred types of chiral chromatographic columns and many chiral selectors are available. On the other hand, the time dedicated to method development in industry is always decreasing. Therefore, a knowledge-based system (KBS) for chiral separations would be valuable to speed up method development. The KBS developed earlier in our laboratory combines chemical and experimental design knowledge. Multi-criteria methods, such as Pareto optimality and Derringer functions are used to select the best experiment after performance of an experimental design and when more than one response is regarded. The system includes 3 modules: technique selection, screening and optimisation. Five techniques, Reversed-Phase Liquid Chromatography (RPLC), Normal-Phase Liquid Chromatography (NPLC), Polar Organic Solvent Chromatography (POSC), Supercritical Fluid Chromatography (SFC) and Capillary Electrophoresis (CE), are included. The development of the separation strategies and of the KBS was done in co-operation with Sanofi-Aventis, Toulouse, France. Method development can be followed by robustness testing using the in-house developed software "Software for Robustness testing" (SRT), created in order to simplify the process of setting up and interpreting robustness tests.

At the moment, H. Ates evaluates the use of newly developed chiral stationary phases (polysaccharide phases with bonded selectors, polysaccharide phases based on chlorinated selectors) for their applicability in chiral separations in POSC.
A. Younes uses the same chiral stationary phases (CSP), but in normal-phase liquid chromatography and reversed-phase liquid chromatography. It is the intention that, if the new stationary phases show adequate enantioselectivity towards a large number of structurally diverse compounds, that the existing strategies of the KBS are updated, or that new separation strategies are defined when needed. This will provide a possibility to update the existing strategies of the KBS in terms of the increasing number of commercially available chiral stationary phases.
Experiments in supercritical fluid chromatography (SFC) mode were recently started by K. De Klerck. She will explore the CSP investigated by H. Ates and A. Younes, include some recently commercialized CSP in order to adapt also the earlier developed screening step in this separation mode. She will also define a complete separation strategy in SFC, including the optimization steps. Finally, she will try to find the most suitable alternative technique to propose in the decision trees when a given technique does not work. This study will be performed by applying chemometric techniques to find the most (dis)similar systems.
D. Mangelings examined the applicability of capillary electrochromatography (CEC) in chiral separations. CEC is an analytical technique, combining both high-performance liquid chromatography (HPLC) and capillary electrophoresis (CE). It uses capillary columns filled with stationary phase, like in HPLC, and an electrical field is applied to perform separations, like in CE. The initial goal was to see if CEC was a technique that allowed defining generic separation strategies, applicable on a large number of compounds with chemical and structural diversity. It was seen that polysaccharide CSP served best for this purpose and a chiral separation strategy fulfilling the initial goal could be defined on these stationary phases.
When using capillaries packed with particle-based stationary phase, generic separation strategies could be defined. However, the technique lacks robustness due to the fragility of the columns. Therefore, efforts are being made to prepare capillary monolithic columns for chiral separations, which might overcome the problems observed with the particle-based columns. Here, the two same approaches will be evaluated as with silica-based particles, i.e. the addition of a chiral selector to the mobile phase, or its binding onto the monolithic matrix. It is again the intention to define generic separation strategies. Another type of stationary phases that will be evaluated are the particle-glued stationary phases, where the particles of classical stationary phases are glued together through a sol gel procedure, and which also eliminate the need for frits.
In this context, classical chiral particle-based stationary phases are tested by A. Hendrickx for their enantioselectivity. Actually, she uses the same CSP as in HPLC and SFC modes. When an improved enantioselectivity is observed also in CEC mode with these phases, the existing separation strategy will be updated. Then, the most enantioselective phases will be converted into particle-glued CSP and again enantioselectivity will be evaluated. This will allow concluding to which extent the glueing process has an influence on the separation performance of the CSP.

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Fingerprint development and data analysis (C. Tistaert, B. Dejaegher)

Chromatographic fingerprints are chromatograms, characteristic for a given complex sample. The development and data analysis of fingerprints is a research topic that is gaining increasing interest in the pharmaceutical and biomedical analysis. Fingerprints are, for example, developed to detect fraud in the synthesis of drugs and food additives. They allow, for instance, to verify, from the impurity profile, whether a molecule has been synthesized using the patented synthesis route, or whether food additives, like vanillin, come from a natural, microbiological or synthetic origin. Such identification is of economical importance. Secondly, fingerprints are also applied to analyze phytotherapeutic products, in order to characterize herbal extracts with the purpose to avoid switching and to result in a better quality control of herbs or extracts. The complexity of the samples often makes it impossible to separate, identify, and quantify all components. Therefore, in the past, often only a selected number of components was determined, which did not always allowed evaluating and judging the intrinsic quality of the sample. For this purpose, the chromatographic fingerprint technology, where the full chromatogram will be used for the extraction of information, was developed. Since 1991, this technology was introduced and accepted by the World Health Organization as an identification and quality-evaluating technique for medicinal herbs. Since 2000, the Chinese State Food and Drug Administration demands fingerprints for the quality control of certain herbal medicines in order to standardize the herbs and their preparations. Fingerprints are also accepted by the USA Food and Drug Administration as an alternative approach to identify a herb, and by the European Agency for the Evaluation of Medicinal Products when the stability of each individual component separately can not be determined. Also Belgian companies that process herbal extracts in their preparations use fingerprints as a quality criterion. Thirdly, also in drug discovery, a screening strategy based on fingerprints could lead to an important improvement. Many commercial drugs are based on molecules discovered in natural organisms, such as plants or bio-organisms. The number of drugs, only developed using drug design methodology, is still rather limited. In view of the large number of plants and bio-organisms with potential medicinal components, a fast methodology is needed that allows to separate herbal and bio-extracts, to evaluate certain activities (e.g. antioxidant, antimicrobial, or cytotoxic activity), and to screen for components responsible for the observed activity.
Fingerprints often contain many overlapping peaks. Therefore, during fingerprint development it is a challenging task to select conditions where a maximal number of components is separated. Secondly, after fingerprint development, the useful information should be extracted from the fingerprints, and linked either to the identification and/or quality control of the sample, or to its activity. For this purpose, multivariate data analysis techniques are indispensable. The research considers three parts: (1) the development of fingerprints, (2) the data pretreatment, and (3) the extraction of relevant information.

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Process Analytical Technologies (S. Pieters, B. Dejaegher)

This research topic tackles Process Analytical Technologies (PAT) – related research, which is another recent research theme within the pharmaceutical industries. The goal of PAT is to guarantee the desired product quality by developing fully understood, robust, continuously controlled and efficient production processes. Chemometrical techniques can be applied to optimize the processes on the one hand, and to extract the desired information out of the huge amount of data on the other hand. To get full benefit out of on-line PAT tools (e.g. NIR) to predict the quality of the product, robust calibration methods need to be evaluated and need to be validated afterwards. In this context, FABI focuses on finding the best way to detect outliers, to select the best variable range and to find a way dealing with the linearity problem of on-line NIR methods.

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Separometrics: Contributions to faster development and validation of pharmaceutical analytical separation methods (B. Dejaegher)

Separometrics is the use of chemometric methods in separation techniques. Research is performed on three subjects. In a first research topic, the applicability of minimal and less frequently used experimental designs in method development/optimization and robustness testing is examined. Method development is often divided into a screening phase where the most important factors are identified, and an optimization phase where the most influencing factors are further optimized. In the context of screening and robustness testing, supersaturated designs were already examined. D-optimal and Rechtschaffner designs will also be evaluated in this context as alternatives to the classic fractional factorial and Plackett-Burman designs. In the context of optimization, the applicability of optimal and uniform designs as response surface designs will be evaluated. In a second research topic, the development and multivariate data analysis of fingerprints will be tackled. Fingerprints will be developed according to a defined strategy. Subsequently, the data will be pre-treated and the relevant information will be extracted using multivariate data analysis techniques, such as multivariate calibration methods. In a third research topic, Process Analytical Technologies (PAT) – related research will be performed.

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Development and validation of simple methods to assay drug formulations (D. Shewiyo, B. Dejaegher)

Experimental designs are also applied in method validation, more specifically during robustness testing, e.g. in the context of a Belgian-Tanzanian Bilateral Scholarship (Belgian Technical Cooperation (BTC)) Program on the development and validation of simple methods to assay drug formulations.
In a first study a normal-phase HPTLC method was developed for the simultaneous analysis of sulfamethoxazole and trimethoprim in co-trimoxazole tablets, and in a second study of lamivudine, stavudine and nevirapine in fixed-dose combination tablets. Both methods were validated and the linearity, precision, trueness, and specificity were evaluated. A robustness test was also performed using an 8-experiments Plackett-Burman design. The results from the validation/robustness test were acceptable, and both methods were found to be linear, precise, true, and robust.

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Comparison of feature selection and modeling approaches in QSAR/QSPR (M. Goodarzi)

Mohammad’s work focuses on the comparison of different feature selection and modeling methods in Quantitative Structure-Activity Relationships (QSAR) and Quantitative Structure-Property Relationships (QSPR) to predict either the biological activity or properties of molecules. QSAR/QSPR are mathematic models to describe the relationship between a biological activity or property and the molecular descriptors of molecules. Two points are taken into account: first, different available softwares are tested to find the most stable conformer compared with x-ray crystallography and docking information (protein-ligand interaction). When a good and optimized structure is obtained, different types of descriptors are calculated. Different feature selections techniques, not only filter but also wrapper methods and especially swarm intelligences are applied to find the most relevant descriptors from the pool. On the other hand, different linear or nonlinear modeling methods are applied to make a robust relationship between the selected descriptors and property or activity. Therefore, these studies can be useful in drug discovery and development and for the design of new compounds with improved potency.

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Evaluation of fused-core columns for fingerprint development (G. Parewyck, D. Mangelings)

Greet’s project mainly focuses on the use of fused core silica particles as stationary phases in HPLC. These stationary phases use particles that have a solid core, surrounded by a porous layer. Earlier, porous particles were mostly used as basis of the stationary phases in HPLC. Hence, a substance can migrate through the particles, which results in band broadening, an undesired phenomenon because it decreases the global efficiency of the column. Fused core particles eliminate the possibility of migration through the particle center due to the solid core, and would theoretically result in faster and more efficient analyses. It is claimed that these stationary phases can compete with UHPLC, a technique that uses ultra high pressures in combination with sub 2 µm particle-based stationary phases to achieve these properties. This project will evaluate whether the predicted behavior of fused core particle-based stationary phases is also seen in practice. Fingerprint chromatograms will be developed on these new stationary phases, on monolithic phases (which also allow fast analyses) and also on classical phases. A comparison between the results will reveal whether the fused core particles show a behavior which is more related to HPLC on monolithic phases or to classical particles. Occasionally, a comparison with UHPLC on sub 2 µm particles can also be made.

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Formerly Studied Topics

Some more information on the different topics

Use of analytical separation techniques to elucidate viral interactions at molecular level (I. Oita)

In cooperation with the department of Pharmaceutical Biotechnology and Molecular Biology (Prof. B. Rombaut, H. Halewijck) of the VUB, a project was started that aims to link analytical separation techniques to virological research. Using a cell-free system for the production of virus material and capillary electrophoresis as separation technique, it is the intention to study some unresolved issues regarding the structure and replication of picornaviruses, such as the function of some viral proteins, the mechanism of initiation of protein- and RNA-synthesis, and the different steps in the morphogenesis. It should also enable i) to detect subviral particles formed during the replication cycle of picornaviruses (morphogenesis), ii) to study the interactions between the viral genome and subviral particles, which leads to the formation of new virions, iii) to study interactions between viral RNA and cellular proteins, iv) to consider interactions between viral and cellular proteins, v) to monitor interactions between viral RNA and viral proteins with particular attention for the determination of the stoichiometry and affinity of, and finally vi) to find and identify new targets for potential antiviral drugs.

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Monolithic columns for capillary electrochromatography (I. Tanret)

Indiana Tanret is working on the implementation of polymeric monolithic stationary phases in columns for (pressurised) capillary electrochromatography and flat-rectangular channel column chromatography within the framework of the IWT-SBO Nextchrom project. These monolithic phases are an alternative for the more commonly used particulate phases, which have many disadvantages. The focus of the work was testing the applicability of these in-house synthesized stationary phases in drug analysis.

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Orthogonal chromatographic systems in pharmaceutical analysis: selection, applications, method development and data-analysis (M. Dumarey)

The aim of the project was to select chromatographic systems that are as orthogonal or as dissimilar as possible, i.e. which have the most different selectivity. With a chromatographic system is meant the combination of (i) a stationary phase, (ii) a mobile phase buffer at a given pH and (iii) an organic modifier type. In this context the applicability and selectivity of new stationary phases, as for instance polystyrene-divinyl copolymer, zirconia based columns (e.g. polybutadiene coated, polystyrene coated, graphitized carbon-clad zirconia), polymeric monolithic columns, fluorinated reversed-phases is examined. This means that their selectivity is compared among each other as well as relative to traditional C8 or C18 reversed-phase columns.
To separate a mixture with an unknown composition, for instance a new drug and its impurities, it is useful to perform a screening on a set of chromatographic systems with varying selectivities. This results in complementary information about the analyzed sample.
One chromatographic system, on which the best separation was obtained, is retained for further method optimization. A methodology will be defined to optimize sequentially the pH and composition of the mobile phase, the temperature and the gradient slope.
A second application for which orthogonal chromatographic systems might be advantageous, is fingerprinting. Fingerprints are mainly used to obtain information about the identity or the quality of phyto-therapeutical products with a complex composition. In this project it will be studied whether combining the data of two orthogonal fingerprints gives better classification and multivariate calibration results.

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Multivariate calibration (X. Capron)

  • Multivariate calibration using different models, mainly PCR and PLS models, more particularly the updating of these models, i.e. how to improve the model when it has to deal with new sources of variance which were not taken into account during the initial calibration step. Various domains of chemometrics were used, such as model selection and validation, information complexity, variable selection, correction of signal, filtering with methods such as the Orthogonal Signal Correction (OSC) or the Net Analyte Signal (NAS).
  • WineDB European project, which aims identifying the country of origin of wines. This work is mainly based on discrimination, classification and feature selection. For this work, mainly techniques such as CART and UVE-PLS are used. Some PCA and PP analysis has also been performed.
  • Estimation of the optimal complexity of a PLS regression model in cases where atypical samples are present in the calibration data, which prevent from using cross-validation methods. Atypical samples are defined as samples fitting to the model in calibration, but behaving as outliers in prediction.

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Chemometrical exploration of environmental data (I. Stanimirova)

The work focused on the chemometrical exploration of environmental data. In this context, some new chemometrical approaches were introduced in environmental science as alternatives to the already existing and their usefulness was compared for interpretation and visualization of environmental data. In order to derive a strategy for exploration of multi-dimensional environmental data:

  • Projection (as PCA, projection pursuit (PP) with different projection indices) and clustering techniques (as hierarchical, density-based approaches, self-organizing maps, neural gas) were explored.
  • A comparative study of two robust PCA algorithms based on PP was carried out on different data sets containing various numbers of objects and variables as well as different observation structures.
  • The performance of a method for three-way analysis called STATIS (Structuration des Tableaux A Trois Indices de la Statistique) was compared with Tucker3 and PARAFAC2, two more commonly used methods.
  • A four-way environmental data set, where missing elements were present, was explored by using the PARAFAC and Tucker methods.
  • The multiple factor analysis (MFA) approach was introduced as an alternative to Procrustes and canonical correlation analyses methods for dealing with data with different blocks of variables, possibly of different type. Furthermore, it was shown that the MFA method can be extended such that a variable selection can be performed by adapting methods applied in PCA for this purpose.
The above-mentioned methods were not only used for interpretation and visualization of environmental data sets. For instance, the use of STATIS was explored for monitoring batch processes (in collaboration with S. Gourvenec). Furthermore, the usefulness of PP combined with Multivariate Regression Trees (MRT) was shown for explaining the presence of groups in analytical data in terms of original variables.

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Alternative methods for multivariate calibration (L. Jin)

The major subject is to propose some alternatives to PCR/PLS for multivariate calibration. In a first stage of the study, the Law of Mixtures (LM) and the Delaunay Triangulation (DT) methods are proposed as new local multivariate calibration methods. In the second stage, updating multivariate calibration with the DT method is investigated.
The proposed LM/DT method can be considered as a Nearest Neighbors method or as what is sometimes called a topological method. In these methods, a mesh of simplexes in the calibration data set is constructed firstly. The result for an unknown sample is then considered as the weighted average of the y-values of the calibration samples that constitute the simplex containing or close to the unknown sample. In all cases studied, the LM/DT methods give at least similar results as PCR/PLS.

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Micellar liquid chromatography in the screening for potential drugs (A. Detroyer)

When screening for drug candidates it is essential to know the extent to which a substance passes biological membranes, because its pharmacological effect depends upon it. In-vitro models of bio-membranes (e.g. Caco-2), although good predictors, do not allow high-throughput screening. Therefore attention is paid to other, e.g. chromatographic, methods. Investigations on classical RPLC systems have been made to correlate retention with log P. This log P is thought to be a parameter representing the main transport mechanism when passing a bio-membrane. Although correlation between log P and the bio-membrane permeability is possible, it is thought that newer chromatographic systems, with more interfacial characteristics, will better represent permeability. This is confirmed using, for instance, immobilised artificial membrane (IAM) columns. However, micellar liquid chromatography (MLC) seemed to be a cheaper alternative. The aim of this project was to make MLC operational as an alternative methodology when trying to predict the biological activity of candidate drugs and to evaluate it in a QSRR (Quantitative Structure Retention Relationship) context. The MLC retention parameter was compared with other bio-membrane passage determining parameters like the log P, the IAM predictor and the Caco-2 predictor. Part of the experiments in this project were performed in co-operation with and at the Janssen Pharmaceutica site in Beerse. Good agreement in results was found and the technique could be considered a fast alternative for the other methods because MLC on monolithic columns could be applied which makes the measurements very fast.

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Combination of chromatographic and molecular descriptors to predict the membrane passage of drugs (E. Deconinck)

A major problem in drug discovery is that molecules, found to be potentially useful as drugs, fail in a later stage of the drug development due to non proper ADME-Tox-properties. Therefore methods are necessary that allow screening for these properties in the first stages of the drug development.
The aim of this project is to combine in-silico (theoretical molecular descriptors) and fast in vitro (chromatographic descriptors, e.g. MLC retention) parameters in models to predict the intestinal absorption or the blood-brain barrier passage of candidate drug molecules. This project was a kind of continuation of the previous one on the use of MLC in this context. In this project the use of theoretical descriptors as well as chromatographic descriptors were evaluated in a QSAR-context. The chromatographic descriptors consist of the retention factors measured on different HPLC systems. A set of orthogonal reversed phase-HPLC systems as well as IAM- and MLC-systems were considered. Modelling was performed using relatively new techniques in the QSAR-domain, like CART and MARS. The use of CART (Classification And Regression Trees), MARS (Multivariate Adaptive Regression Splines) and two step-MARS (TMARS) were already evaluated for the prediction of gastro-intestinal absorption of drugs. The improvement of the obtained models by adding the measured chromatographic descriptors were evaluated, and also other chemometric techniques were evaluated for their use in the prediction of gastro-intestinal absorption: Boosted Classification Trees and different two-step modeling techniques.
The use of these techniques was also evaluated for the prediction of other molecular or sample properties, as e.g. blood-brain barrier passage, the anti-oxidative capacity of green tea and the inhibitory effect of certain drugs on enzyme activity.

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Regression trees and MARS in QSRR and in the selection of orthogonal systems (R. Put)

This research consisted of two subjects, both dealing with chemometrical applications on chromatographic data. The major topic was quantitative structure-retention relationships (QSRR). QSRR's are models that predict the chromatographic retention of solutes, based on their physico-chemical or structural properties, which are encoded in molecular descriptors. In order to build meaningful models, appropriate descriptors should be selected from a wide range of available. The methods studied in the QSRR context were new in this research area, such as classification and regression trees (CART) and multivariate adaptive regression splines (MARS).
The second topic dealt with the selection of the most orthogonal chromatographic systems. In this context the use of (univariate) CART-bushes and auto-associative multivariate regression trees (AAMRT) was studied. QSRR's were also studied a) for a data set of peptides measured on a series of chromatographic systems and b) for a relatively large set of drugs on orthogonal chromatographic systems. In these contexts, two-step MARS, MARS and MLR were compared. The use of Genetic Algorithms for the selection of proper molecular descriptors was studied too.

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Prediction of enantioselectivity (S. Caetano)

The aim of this research was to predict the enantioselectivity of given systems towards the chiral separation of compounds, i.e., to build models that are able to indicate whether a separation between two enantiomers is possible or not. At present time, if someone wishes to perform a chiral separation of some substance one must seek the suitable chiral stationary phase (CSP) by trial and error, making the selection time consuming and expensive. Therefore, the possibility to predict whether or not a certain CSP is able to perform a chiral separation would be of great benefit.
To reach this goal several chemometrical techniques were being used, such as Classification and Regression Trees (CART), Partial Least Squares (PLS), Stepwise Multiple Linear Regression (stepwise-MLR) and Multivariate Adaptive Regression Splines (MARS). These methodologies were used to build models that are able to correlate the molecular descriptors (occasionally able to distinguish between enantiomers, such as chirality codes) with the enantiomeric selectivity. Different responses to describe enantioselectivity like the separation factor and the resolution were used to build the models.

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Fast chromatography (A.M. Van Nederkassel)

In this research topic it was evaluated what are the possibilities of very fast chromatographic methods (with analysis times of e.g. less than one minute). Monolithic columns were used for this purpose. Such fast chromatograms with a short run time can be treated as if it were spectra. This means that the chemometric techniques used in spectroscopy can be applied. For instance multivariate calibration, in which the complete chromatogram is used to model and predict a given property, could be used. This was done, for instance, to predict the antioxidant capacity of green tea extracts. These multivariate analyses also required pretreatment of the chromatograms, e.g. to align a given peak in the different chromatograms. To estimate concentrations of individual compounds overlapping with others in the chromatogram, peak resolution methods are required.
In the above context, the following applications were investigated:

  1. Method development and evaluation of the transfer - and acceleration - of some separations, developed on classical HPLC columns, to monolithic columns. The robustness of the transferred separations was also examined.
  2. Development of a fast separation method for green tea extracts on a monolithic column and estimation of the antioxidant capacity of the extracts from their chromatogram building a multivariate calibration model. This is an application where the complete chromatogram is used to estimate a global property. The following techniques are used: Correlation Optimized Warping to align the chromatograms, robust PCA (R-PCA) to detect leverage objects and PLS and Uninformative Variable Elimination-PLS to build a model.
  3. Development of a fingerprint chromatogram for the Ginkgo Biloba extract on a monolithic stationary phase, in the context of determining the quality of herbal medicines. A screening design was used to optimize the operating parameters of the ELS detector.
  4. Comparison of the performance of three aligning methods for different data sets: Correlation Optimized Warping (COW), Parametric Time Warping (PTW) and Semi-Parametric Time Warping (STW).

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